Showing posts with label chloroplast. Show all posts
Showing posts with label chloroplast. Show all posts

Friday, October 11, 2013

Daily Newsletter: October 11, 2013 - Light Dependent Reactions



Daily Newsletter

October 11, 2013 -  Light Dependent Reactions


We have looked at the harvesting of electrons by phototrophs (specifically in cyanobacteria and chloroplasts).  You will recall the image to the right. It shows the two photosystems, and the generation of NADPH and ATP.
Thylakoid Membrane
Recall the two photosystems are based upon pigment reaction centers.

The chloroplast of the the plant has two know Photosystems: P680 (Photosystem II) and P700 (Photosystem I).
  • Photosystem II
    • Used to Generate ATP (chemiosmosis)
    • Water is split to recharge the P680 reaction center with electrons and hydrogens.
    • Donates electrons to Photosystem I
  • Photosystem I
    • Can operate either Cyclic or Non-Cyclic
    • Non-Cyclic
      • Excited electrons are given to NADP+
      • Electrons accepted from Photosystem I to recharge the P700 reaction center.
    • Cyclic
      • Excited electrons are used to make ATP (chemiosmosis)
      • Electrons are returned to Photosystem I (recycled) to recharge P700 reaction center.
Remember: The photosystems are complex arrangements of chlorophyll pigments found in the thylakoid membrane. When electrons are used to make ATP, the electrons will be passed between electron carriers that act as proton pumps. The electrons are used to build and maintain a proton motive force, which will directly be used to make ATP. So all electron movement is occurring due to electron carriers in the membrane.
Now, what does all this mean for a plant? Throughout, we have talked about absorbance, but what is it? Simply put, absorbance describes the amount of light (photons) that is intercepted (absorbed) by the pigment. Each pigment has an absorbance spectrum, which is the wavelengths of light that the pigment can absorb.


Absorbance Spectrum Chlorophyll A and B To the right you will see the absorbance spectra of chlorphyll A and chlorophyll B. Both of these pigments are chlorophyll, thus we see them as green (but different shades of green). Each has a slightly different absorbance maximum; that would be the peaks on the graph (note the Y-axis is absorbance). So, Chlorophyll A absorbs strongly at 410nm, 430nm and 662nm, but best at 430 nm. Chlorophyll B absorbs best at 453. But there are more than just two pigments found in plants (and other photosynthetic organisms.

Plant Pigments AbsorptionThe graph to the left shows more pigements. Five pigments in all are shown. Notice that some, such as phycoerythrin and phyocyanin have absorption maxima at 550 and 610 respectively. Phycoerytrhin appears to the human eye as red (erythrin = red) and Phycocyanin is light blue (cyanin = blue). Carotene is characteristically orange. All of these, and more, can be found in plants. Why would a plant have so many different pigments?

To absorb as much light as possible. That is the #1 best answer!

Through evolution, plants have also mixed different pigments for other purposes, such as floral color attracting pollinators. For example, did you know that some flowers have UV pigments? Look at this image of the evening primrose. Evening PrimroseTo the left is what humans see, a full yellow flower; but under UV light, there is a large bullseye in the center. Insects see the bullseye, not the yellow flower. So pigments can be multipurpose.


Plants, and most other photosynthetic organisms, maintain multiple pigments to harvest as much light as they can. The ratio of pigments establishes the Action Spectrum of the plant, the wavelengths of light where they will have the highest yields of NADPH and ATP. This ratio of pigments will also produce distinctive colors. Are all plants green? Coleus Have you seen any shaded yellow? How about plants that have leaves with multiple colors? Here is a good example with Coleus. As you can see, there are different leaf coloration. Each variety would have different action spectrum, as each have a different pigment ratio. Why do you think plants would need different action spectrum? (Think survival strategy).

Consider a forest: You have a canopy of tall trees, then some intermediate sized trees and shrubs, then ground plants. Do shade plants have action spectra that differ from those of the canopy? Consider a plant that is being "shaded"; what does it mean to be "shaded"? You still get light, but is the light the same full spectrum light that the canopy is getting?

 
Going deeper into chloroplasts and the ancestral cyanobacteria, we find that there are distinct linages of chloroplasts.  Each lineage has different primary pigments, but you can find the biosynthetic pathways for all pigments in the cyanobacteria.  Below is a table published on the Wikipedia page for Chloroplasts.  The author of the image did an amazing job representing the various chloroplast lineages and demonstrating the pigments found in each lineage.  A clever point here is that the image author used the color reflected by the pigment (related to absorbance spectrum) and the organism (action spectrum) to provide a visual reference.  Make note that all the pigments can be found in cyanobacteria.
 

 




Daily Challenge

In your own words, discuss the concepts of absorbance spectrum and action spectrum. Show how they are related concepts, but describe different aspects of light absorption. Make sure you address the following questions:
  • Why do phototrophs need so many different pigments?
  • What does a single phototroph need more than one?
  • What is the difference between land plants and red algae that would have them being successful with different pigments?

Monday, October 7, 2013

Daily Newsletter: October 07, 2013 - Introduction to Photosynthesis

Daily Newsletter

October 07, 2013 Introduction to Photosynthesis



For this discussion, we will focus on Photosynthesis in eukaryotes, specifically in the chloroplast.

Chloroplast

Like the mitochondria, the chloroplast is an endosymbiont.  The cyanobacteria (photosynthetic bacteria) is the prokaryotic relative of the modern chloroplast.  The cyanobacteria became an endosymbiont after the formation of the mitochondria (remember, all eukaryotes carry mitochondria (or at least mitochondrial DNA), but only photosynthetic eukaryotes have chloroplasts).  There are different lineages of chloroplasts, just as there are different lineages of mitochondria.  NOTE:  Cyanobacteria is a phyllum of bacteria.  The chloroplast is considered a part of that phyllum.

Figure 1: The Chloroplast - http://en.wikipedia.org/wiki/File:Chloroplast_II.svg
The structure of the chloroplast has been maximized for photosynthesis. As can be seen in the image to the right (figure 1), you have an organelle that is composed of multiple membrane compartments.

The outer chloroplast membrane is eukaryotic in nature, while the inner membrane is bacterial in origin and composition.  In some plants, there is even a peptidoglycan cell wall (bacterial cell wall) between the outer and inner membrane.

Inside of the inner membrane, the chloroplast can be divided into the Stroma and the Thylakoid Membranes.

The stroma is the fluid filled inner compartment of the chloroplast, while the thylakoid membrane is an internal membrane that specializes in the harvesting light (photons) and converting the energy into reducing power.The thylakoid membrane is divided into two main types:  Stromal Thylakoids (aka Lamellae or Frets) and Granal Thylakoids.  The granal yhylakoids make up the stacks of thylakoids known as Granum, while the stromal thylakoids create supporting structure.  The entire system of thylakoid membranes is suspended inside of the stroma.

The thylakoid membrane system has its origin in the Cyanobacteria (see figure 2).  The cyanobacteria are one of the bacterial groups able to create internal membranes.  They form Photosynthetic Lamellae, which are the precursors to the thylakoid membrane. This lamellae provides an increased surface area for pigments (phycobilisomes).  This increases the chance that a photon will strike a pigment in the correct orientation.  If it were not for the increased surface area, the bacterium would have very little energy to carry out carbon fixation.  (Remember:  To get enough energy, a phototroph needs an increased surface area).

Figure 2: Cross-Section Structure of Cyanobacteria-http://images.tutorvista.com/content/kingdoms-living-world/cyanobacteria-cell-structure.jpeg

Photosynthesis

Photosynthesis is divided into two stages:  the Light Dependent Reactions and the Calvin Cycle (aka Light Independent or Dark reactions).

The light dependent reactions involve the pigments (photosystems) and proteins of the thylakoid membranes.  Within the system of thylakoid membranes, NADPH + H+ and ATP will be produced.  You will see the formation of a proton motor force, which will be used to make ATP.  Note that we are not using NAD+, but instead NADP+.  As a generality, NAD+is the electron carrier used in catabolic reactions, while NADP+ is the electron carrier used in anabolic reactions (why?  does it have to do with the enzymes being used?).

The energy (reducing power and ATP) created during the Light Dependent Reactions will be used in the Calvin Cycle to reduce carbon compounds, with the end result being the production of glucose. In your studies of biology, you may have seen the following reactions:
Cellular Respiration
C6H12O6 (s) + 6 O2 (g) → 6 CO2 (g) + 6 H2O (l) + heat
Photosynthesis
light + 6CO2 + 12H20 --> C6H12O6 + 6O2 + 6H2

They look simple, but as we have discussed with cellular respiration, it takes many steps to get to the final product. Likewise, with photosynthesis, we are not going to complete this general reaction in one step. One common misconception is that Cellular Respiration is the reverse of Photosynthesis. On the surface they may appear to be reversals, but you're not going to see cellular respiration solely in reverse (there are times that you will see some reactions from glycolysis).  


Daily Challenge 

Compare the origin, structure and function of the chloroplast and mitochondria. The mitochondria had a folded inner membrane, and in the chloroplast, there is an entire system of internal membranes. Why is surface area so critical to the functions of these organelles?  Why do critical reactions (Calvin Cycle and Citric Acid Cycle) take place within these organelles?  If we but chloroplasts into a human, could they become photoautotropic?